Pathway specific heatmap

Pathway specific heatmap

Usage

pathway_specific_heatmap(object, pathway_name)

Arguments

object

A CASCAM object.

pathway_name

The interested pathway, which should be within the KEGG and Hallmark pathways.

Value

Examples

if (FALSE) {
gene_info <- create_InformativeGenes(tumor_ct, tumor_label2, "ILC")
CASCAM_eg <- create_CASCAM(tumor_aligned, tumor_label, camod_aligned, gene_info)
CASCAM_eg <- sda_model(CASCAM_eg)
CASCAM_eg <- genome_selection(CASCAM_eg)
CASCAM_eg <- genome_selection_visualize(CASCAM_eg)
CASCAM_eg <- pathway_analysis(CASCAM_eg)
CASCAM_eg <- pathway_specific_heatmap(CASCAM_eg, "KEGG_CELL_CYCLE")
}