Function reference
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CASCAM-class - The CASCAM class
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Celligner() - Celligner: tumor and cell line model normalized RNASeq data alignment
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InformativeGenes-class - The InformativeGenes class
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create_CASCAM() - Create a CASCAM object
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create_InformativeGenes() - Create an InformativeGenes object
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genome_selection() - Genome-wide pre-selection analysis
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genome_selection_visualize() - Visualization of genome-wide pre-selection analysis
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pathview_analysis() - Pathview of the interested camod in interested pathway
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pathway_analysis() - Pathway specific selection analysis
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pathway_congruence_heatmap() - Pathway congruence heatmap
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pathway_specific_heatmap() - Pathway specific heatmap
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pathway_specific_ridgeline() - Pathway specific gene expression ridgeline
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run_CASCAM_app() - Shiny app for CASCAM
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sda_model() - SDA model trained by tumor gene expression
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sda_model_cv() - SDA model trained by tumor gene expression